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A similar thing happened (sorta) with the Department of Defense and S.H.I.E.L.D with the use of the F-35 in The Avengers (2012).
Explanation:
An agreement was made by the DoD and Marvel to use and film the F-35 in The Avengers (2012). however, the DoD pulled out of the agreement since the faction the F-35 was is S.H.I.E.L.D. Since S.H.I.E.L.D. was a secretive governmental organization even to the US government and whose loyalties were unclear, the decision was made by the DoD to not let the filmmakers film scenes in the F-35. Hence, the filmmakers use a CGI model instead.
have you ever wondered why UNIT was renamed from "United Nations Intelligence Taskforce" to "Unified Intelligence Taskforce" in New Who? this is why.
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